Read e-book online Implementing Reproducible Research PDF

By Victoria Stodden, Friedrich Leisch, Roger D. Peng

ISBN-10: 1466561599

ISBN-13: 9781466561595

ISBN-10: 1466561602

ISBN-13: 9781466561601

In computational technological know-how, reproducibility calls for that researchers make code and information on hand to others in order that the knowledge could be analyzed in an identical demeanour as within the unique booklet. Code has to be on hand to be allotted, information needs to be available in a readable structure, and a platform needs to be to be had for broadly dispensing the knowledge and code. furthermore, either information and code have to be authorized permissively adequate in order that others can reproduce the paintings and not using a immense felony burden.

Implementing Reproducible Research covers a number of the parts precious for engaging in and allotting reproducible study. It explains tips to appropriately reproduce a systematic outcome.

Divided into 3 components, the publication discusses the instruments, practices, and dissemination systems for making sure reproducibility in computational technology. It describes:

  • Computational instruments, reminiscent of Sweave, knitr, VisTrails, Sumatra, CDE, and the Declaratron system
  • Open resource practices, strong programming practices, traits in open technology, and the position of cloud computing in reproducible research
  • Software and methodological structures, together with open resource software program programs, RunMyCode platform, and open entry journals

Each half provides contributions from leaders who've constructed software program and different items that experience complicated the sphere. Supplementary fabric is offered at www.ImplementingRR.org.

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Additional info for Implementing Reproducible Research

Sample text

1 Provenance-Rich Results. . . . . . . . . . . . . . . . . . 2 Workflow Upgrades . . . . . . . . . . . . . . . . . . . . 3 Managing Data and Their Versions . . . . . . . . . . . 4 Using Provenance for Future Work . . . . . . . . . . . 2 Publishing Results . . . . . . . . . . . . . . . . . . . . . . . . . . 3 Publishing Interactive Results on the Web . . . . . . . . . . . . 5 Challenges and Opportunities .

4 Reproducing and Publishing Results with VisTrails. . . . . . . . . . . 1 Reproducibility Support . . . . . . . . . . . . . . . . . . . . . . . 1 Provenance-Rich Results. . . . . . . . . . . . . . . . . . 2 Workflow Upgrades . . . . . . . . . . . . . . . . . . . . 3 Managing Data and Their Versions . . . . . . . . . . . 4 Using Provenance for Future Work . . . . . . . . . . . 2 Publishing Results .

7 Conclusion. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51 Acknowledgments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52 References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 Introduction Science has long placed an emphasis on revisiting and reusing past results: reproducibility is a core component of the scientific process.

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Implementing Reproducible Research by Victoria Stodden, Friedrich Leisch, Roger D. Peng


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